1 | #!/usr/bin/env python
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2 | #
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3 | # Author: Lan Huong Nguyen (lanhuong @stanford)
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4 | # Copyright (c) 2012-2016 California Institute of Technology.
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5 | # License: 3-clause BSD. The full license text is available at:
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6 | # - http://mmckerns.github.io/project/mystic/browser/mystic/LICENSE
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7 |
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8 | debug = True #False
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9 | MINMAX = -1 ## NOTE: sup = maximize = -1; inf = minimize = 1
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10 | #######################################################################
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11 | # scaling and mpi info; also optimizer configuration parameters
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12 | # hard-wired: use DE solver, don't use mpi, F-F' calculation
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13 | #######################################################################
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14 | npop = 40
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15 | maxiter = 6000
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16 | maxfun = 1e+6
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17 | crossover = 0.9
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18 | percent_change = 0.9
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19 | convergence_tol = 1e-6
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20 | tolW = 0.05; tolP_range_fr = 0.05
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21 | ngen = 200; ngcol = 200
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22 |
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23 |
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24 | #######################################################################
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25 | # the model function
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26 | #######################################################################
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27 | from surrogate import marc_surr as model0
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28 |
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29 | #######################################################################
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30 | # the differential evolution optimizer
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31 | #######################################################################
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32 | def optimize(cost,_bounds,_constraints):
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33 | from mystic.solvers import DifferentialEvolutionSolver2
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34 | from mystic.strategy import Best1Exp
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35 | from mystic.monitors import VerboseMonitor, Monitor
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36 | from mystic.tools import random_seed
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37 |
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38 | random_seed(122)
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39 |
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40 | stepmon = VerboseMonitor(10,10)
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41 | #stepmon = Monitor()
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42 | evalmon = Monitor()
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43 |
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44 | lb,ub,npts = _bounds
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45 | ndim = len(lb)
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46 |
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47 | solver = DifferentialEvolutionSolver2(ndim,npop)
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48 | solver.SetRandomInitialPoints(min=lb,max=ub)
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49 | solver.SetStrictRanges(min=lb,max=ub)
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50 | solver.SetEvaluationLimits(maxiter,maxfun)
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51 | solver.SetEvaluationMonitor(evalmon)
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52 | solver.SetGenerationMonitor(stepmon)
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53 | solver.SetConstraints(_constraints)
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54 |
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55 | import collapse_code
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56 | return collapse_code.collapseSolver(solver, cost, npts, lb, ub, convergence_tol, tolW, \
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57 | tolP_range_fr, ngen, ngcol, Best1Exp, crossover, \
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58 | percent_change, stepmon, _constraints)
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59 | #######################################################################
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60 | # maximize the function
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61 | #######################################################################
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62 | def maximize(params,npts,bounds):
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63 |
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64 | from mystic.math.measures import split_param
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65 | from mystic.math.discrete import product_measure
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66 | from mystic.math import almostEqual
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67 | from numpy import inf
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68 | atol = 1e-18 # default is 1e-18
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69 | rtol = 1e-7 # default is 1e-7
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70 | target,error = params
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71 | lb,ub = bounds
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72 |
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73 | # split lower & upper bounds into weight-only & sample-only
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74 | w_lb, x_lb = split_param(lb, npts)
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75 | w_ub, x_ub = split_param(ub, npts)
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76 |
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77 | # NOTE: rv, lb, ub are of the form:
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78 | # rv = [wxi]*nx + [xi]*nx + [wyi]*ny + [yi]*ny + [wzi]*nz + [zi]*nz
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79 |
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80 | # generate primary constraints function
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81 | def constraints(rv, cnstr_x=None):
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82 | c = product_measure()
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83 | c.load(rv, npts)
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84 | # NOTE: bounds wi in [0,1] enforced by filtering
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85 | # impose norm on each discrete measure
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86 | for measure in c:
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87 | if not almostEqual(float(measure.mass), 1.0, tol=atol, rel=rtol):
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88 | measure.normalize()
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89 | # impose expectation on product measure
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90 | ##################### begin function-specific #####################
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91 | E = float(c.expect(model))
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92 | if not (E <= float(target[0] + error[0])) \
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93 | or not (float(target[0] - error[0]) <= E):
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94 | c.set_expect((target[0],error[0]), model, (x_lb,x_ub), cnstr_x)
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95 | ###################### end function-specific ######################
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96 | # extract weights and positions
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97 | return c.flatten()
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98 |
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99 | # generate maximizing functio
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100 | def cost(rv):
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101 | c = product_measure()
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102 | c.load(rv, npts)
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103 | E = float(c.expect(model))
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104 | if E > (target[0] + error[0]) or E < (target[0] - error[0]):
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105 | if debug: print "skipping expect: %s" % E
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106 | return inf #XXX: FORCE TO SATISFY E CONSTRAINTS
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107 | return MINMAX * c.pof(model)
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108 |
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109 | # maximize
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110 | solved, func_max, tot_evaluations, collapse_data = optimize(cost,(lb,ub,npts),constraints)
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111 |
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112 | if MINMAX == 1:
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113 | print "func_minimum: %s" % func_max # inf
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114 | else:
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115 | print "func_maximum: %s" % func_max # sup
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116 | print "tot_evaluations: %s" % tot_evaluations
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117 |
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118 | return solved, func_max, collapse_data
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119 |
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120 |
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121 | #######################################################################
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122 | # rank, bounds, and restart information
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123 | #######################################################################
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124 | if __name__ == '__main__':
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125 | from time import clock
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126 | start = clock()
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127 |
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128 | from mystic.tools import wrap_function
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129 | from mystic.monitors import Null
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130 | fmon = Null()
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131 | model_evaluations, model = wrap_function(model0, [], fmon)
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132 | function_name = model0.__name__
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133 |
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134 | H_mean = 6.5 #NOTE: SET THE 'mean' HERE!
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135 | H_range = 1.0 #NOTE: SET THE 'range' HERE!
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136 | nx = 3 #NOTE: SET THE NUMBER OF 'h' POINTS HERE!
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137 | ny = 3 #NOTE: SET THE NUMBER OF 'a' POINTS HERE!
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138 | nz = 3 #NOTE: SET THE NUMBER OF 'v' POINTS HERE!
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139 | target = (H_mean,)
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140 | error = (H_range,)
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141 |
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142 | w_lower = [0.0]
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143 | w_upper = [1.0]
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144 | h_lower = [60.0]; a_lower = [0.0]; v_lower = [2.1]
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145 | h_upper = [105.0]; a_upper = [30.0]; v_upper = [2.8]
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146 |
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147 | lower_bounds = (nx * w_lower) + (nx * h_lower) \
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148 | + (ny * w_lower) + (ny * a_lower) \
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149 | + (nz * w_lower) + (nz * v_lower)
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150 | upper_bounds = (nx * w_upper) + (nx * h_upper) \
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151 | + (ny * w_upper) + (ny * a_upper) \
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152 | + (nz * w_upper) + (nz * v_upper)
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153 |
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154 | print "...SETTINGS..."
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155 | print "npop = %s" % npop
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156 | print "ngen = %s" %ngen
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157 | print "ngcol = %s" %ngcol
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158 | print "maxiter = %s" % maxiter
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159 | print "maxfun = %s" % maxfun
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160 | print "convergence_tol = %s" % convergence_tol
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161 | print "crossover = %s" % crossover
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162 | print "percent_change = %s" % percent_change
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163 | print "..............\n"
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164 |
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165 | print " model: f(x) = %s(x)" % function_name
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166 | print " target: %s" % str(target)
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167 | print " error: %s" % str(error)
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168 | print "..............\n"
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169 |
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170 | param_string = "["
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171 | for i in range(nx):
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172 | param_string += "'wx%s', " % str(i+1)
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173 | for i in range(nx):
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174 | param_string += "'x%s', " % str(i+1)
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175 | for i in range(ny):
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176 | param_string += "'wy%s', " % str(i+1)
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177 | for i in range(ny):
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178 | param_string += "'y%s', " % str(i+1)
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179 | for i in range(nz):
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180 | param_string += "'wz%s', " % str(i+1)
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181 | for i in range(nz):
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182 | param_string += "'z%s', " % str(i+1)
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183 | param_string = param_string[:-2] + "]"
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184 |
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185 | print " parameters: %s" % param_string
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186 | print " lower bounds: %s" % lower_bounds
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187 | print " upper bounds: %s" % upper_bounds
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188 | # print " ..."
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189 | pars = (target,error)
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190 | npts = (nx,ny,nz)
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191 | bounds = (lower_bounds,upper_bounds)
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192 | solved, diameter, collapse_data = maximize(pars,npts,bounds)
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193 |
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194 | from numpy import array
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195 | from mystic.math.discrete import product_measure
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196 | c = product_measure()
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197 | c.load(solved,npts)
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198 | print "solved: [wx,x]\n%s" % array(zip(c[0].weights,c[0].positions))
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199 | print "solved: [wy,y]\n%s" % array(zip(c[1].weights,c[1].positions))
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200 | print "solved: [wz,z]\n%s" % array(zip(c[2].weights,c[2].positions))
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201 |
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202 | print "expect: %s" % str( c.expect(model) )
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203 |
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204 | elapsed = (clock() - start)
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205 |
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206 | print "########################"
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207 | print 'RUNTIME = %s' %elapsed
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208 | print 'COLLAPSE DATA= %s' %collapse_data
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209 | print 'MODEL Evaluations = %s' %model_evaluations
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210 | # EOF
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