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Changeset 88

Timestamp:

02/11/09 14:26:22 (7 years ago)

Author:

mmckerns

Message:

added branch that merges mystic/trunk and branches/pyina at r87;
reduced dependency footprint for mystic & pyina;
reorganized directories, reduced code duplication, cleaned imports;
pyina now builds around mystic (imported in pyina/init.py);
bugfixes/corrections to examples for both pyina (needs testing) & mystic

Location:

branches/merge-pyina-at-r87

Files:

: 165 added

. (added)
trunk (added)
trunk/mystic (added)
trunk/mystic/ABOUT-MYSTIC.txt (added)
trunk/mystic/MYSTIC-EXAMPLE.txt (added)
trunk/mystic/Make.mm (added)
trunk/mystic/NOTES (added)
trunk/mystic/README (added)
trunk/mystic/TODO (added)
trunk/mystic/examples (added)
trunk/mystic/examples/Make.mm (added)
trunk/mystic/examples/cg_rosenbrock.py (added)
trunk/mystic/examples/cg_zimmermann.py (added)
trunk/mystic/examples/derun.py (added)
trunk/mystic/examples/example.py (added)
trunk/mystic/examples/example_getCost.py (added)
trunk/mystic/examples/forward_model.py (added)
trunk/mystic/examples/forward_mogi.py (added)
trunk/mystic/examples/gplot_test_ffit.py (added)
trunk/mystic/examples/metropolis.py (added)
trunk/mystic/examples/mpl_corana.py (added)
trunk/mystic/examples/qld_circle_dual.py (added)
trunk/mystic/examples/sam_cg_rosenbrock.py (added)
trunk/mystic/examples/sam_circle_matlab.py (added)
trunk/mystic/examples/sam_corana.py (added)
trunk/mystic/examples/sam_corana2.py (added)
trunk/mystic/examples/sam_mogi.py (added)
trunk/mystic/examples/sam_rosenbrock.py (added)
trunk/mystic/examples/sam_zimmermann.py (added)
trunk/mystic/examples/scipy_ffit.py (added)
trunk/mystic/examples/test_br8.py (added)
trunk/mystic/examples/test_br8_mpi.out.V (added)
trunk/mystic/examples/test_br8_mpi.out.X (added)
trunk/mystic/examples/test_br8_mpi.out.Y (added)
trunk/mystic/examples/test_circle.m (added)
trunk/mystic/examples/test_circle.py (added)
trunk/mystic/examples/test_corana.py (added)
trunk/mystic/examples/test_dejong3.py (added)
trunk/mystic/examples/test_dejong4.py (added)
trunk/mystic/examples/test_dejong5.py (added)
trunk/mystic/examples/test_ffit.py (added)
trunk/mystic/examples/test_ffit2.py (added)
trunk/mystic/examples/test_ffitB.py (added)
trunk/mystic/examples/test_fosc3d.py (added)
trunk/mystic/examples/test_griewangk.py (added)
trunk/mystic/examples/test_lorentzian.py (added)
trunk/mystic/examples/test_lorentzian2.py (added)
trunk/mystic/examples/test_mogi.py (added)
trunk/mystic/examples/test_mogi2.py (added)
trunk/mystic/examples/test_mogi3.py (added)
trunk/mystic/examples/test_mogi4.py (added)
trunk/mystic/examples/test_mogi_anneal.py (added)
trunk/mystic/examples/test_mogi_leastsq.py (added)
trunk/mystic/examples/test_rosenbrock.py (added)
trunk/mystic/examples/test_twistedgaussian.py (added)
trunk/mystic/examples/test_twistedgaussian2.py (added)
trunk/mystic/examples/test_twistedgaussian3.py (added)
trunk/mystic/examples/test_wavy.py (added)
trunk/mystic/examples/test_zimmermann.py (added)
trunk/mystic/examples_other (added)
trunk/mystic/examples_other/CubeSection.py (added)
trunk/mystic/examples_other/DATA (added)
trunk/mystic/examples_other/DATA/g1.pts (added)
trunk/mystic/examples_other/DATA/g2.pts (added)
trunk/mystic/examples_other/Make.mm (added)
trunk/mystic/examples_other/cube.g (added)
trunk/mystic/examples_other/mystic.nb (added)
trunk/mystic/examples_other/test_argv.py (added)
trunk/mystic/examples_other/test_gplot.py (added)
trunk/mystic/examples_other/test_scem.py (added)
trunk/mystic/examples_other/test_smo1.py (added)
trunk/mystic/examples_other/test_svc1.py (added)
trunk/mystic/examples_other/test_svc2.py (added)
trunk/mystic/examples_other/test_svr1.py (added)
trunk/mystic/examples_other/test_svr2.py (added)
trunk/mystic/models (added)
trunk/mystic/models/Make.mm (added)
trunk/mystic/models/__init__.py (added)
trunk/mystic/models/br8.py (added)
trunk/mystic/models/chebyshev8.py (added)
trunk/mystic/models/circle.py (added)
trunk/mystic/models/corana.py (added)
trunk/mystic/models/mogi.py (added)
trunk/mystic/models/poly2.py (added)
trunk/mystic/mystic (added)
trunk/mystic/mystic/Make.mm (added)
trunk/mystic/mystic/README (added)
trunk/mystic/mystic/__init__.py (added)
trunk/mystic/mystic/const.py (added)
trunk/mystic/mystic/detools.py (added)
trunk/mystic/mystic/differential_evolution.py (added)
trunk/mystic/mystic/filters.py (added)
trunk/mystic/mystic/forward_model.py (added)
trunk/mystic/mystic/helputil.py (added)
trunk/mystic/mystic/metropolis.py (added)
trunk/mystic/mystic/nmtools.py (added)
trunk/mystic/mystic/polytools.py (added)
trunk/mystic/mystic/scemtools.py (added)
trunk/mystic/mystic/scipy_optimize_fmin.py (added)
trunk/mystic/mystic/svctools.py (added)
trunk/mystic/mystic/svmtools.py (added)
trunk/mystic/mystic/tools.py (added)
trunk/mystic/setup.py (added)
trunk/mystic/tests (added)
trunk/mystic/tests/Make.mm (added)
trunk/pyina (added)
trunk/pyina/Make.mm (added)
trunk/pyina/NOTES (added)
trunk/pyina/applications (added)
trunk/pyina/applications/Make.mm (added)
trunk/pyina/applications/dumb.batch (added)
trunk/pyina/applications/ezrun.py (added)
trunk/pyina/applications/ezrun2.py (added)
trunk/pyina/applications/machines.py (added)
trunk/pyina/applications/mpiversion.py (added)
trunk/pyina/applications/parallel_batch.py (added)
trunk/pyina/applications/pbatch.py (added)
trunk/pyina/examples (added)
trunk/pyina/examples/Make.mm (added)
trunk/pyina/examples/mpi_differential_evolution.py (added)
trunk/pyina/examples/parallel_desolve.py (added)
trunk/pyina/examples/test_br8_mpi.py (added)
trunk/pyina/examples/test_mpimogi.py (added)
trunk/pyina/examples/test_mpimogi2.py (added)
trunk/pyina/examples/test_mpimogi3.py (added)
trunk/pyina/examples/test_tg3p.py (added)
trunk/pyina/examples_other (added)
trunk/pyina/examples_other/Make.mm (added)
trunk/pyina/examples_other/README (added)
trunk/pyina/examples_other/hello.py (added)
trunk/pyina/examples_other/pypi.py (added)
trunk/pyina/examples_other/test0.py (added)
trunk/pyina/examples_other/test1.py (added)
trunk/pyina/examples_other/test2.py (added)
trunk/pyina/examples_other/test3.py (added)
trunk/pyina/examples_other/test_ezmap.py (added)
trunk/pyina/examples_other/test_ezmap2.py (added)
trunk/pyina/examples_other/test_mogi.py (added)
trunk/pyina/examples_other/test_mogi2.py (added)
trunk/pyina/examples_other/test_mogi3.py (added)
trunk/pyina/examples_other/test_parallelmap.py (added)
trunk/pyina/examples_other/test_plugin.py (added)
trunk/pyina/examples_other/txx.py (added)
trunk/pyina/mystic_files.py (added)
trunk/pyina/pyina (added)
trunk/pyina/pyina/Make.mm (added)
trunk/pyina/pyina/README (added)
trunk/pyina/pyina/__init__.py (added)
trunk/pyina/pyina/ez_map.py (added)
trunk/pyina/pyina/launchers.py (added)
trunk/pyina/pyina/mpi_detools.py (added)
trunk/pyina/pyina/mpi_differential_evolution.py (added)
trunk/pyina/pyina/mpiconsts.py (added)
trunk/pyina/pyina/mpitools.py (added)
trunk/pyina/pyina/parallel_desolve.py (added)
trunk/pyina/pyina/parallel_map.py (added)
trunk/pyina/pyina/parallel_map2.py (added)
trunk/pyina/pyinamodule (added)
trunk/pyina/pyinamodule/Make.mm (added)
trunk/pyina/pyinamodule/_pyina.cc (added)
trunk/pyina/pyinamodule/dummy.cc (added)
trunk/pyina/pyinamodule/local.def (added)
trunk/pyina/setup.py (added)
trunk/pyina/tests (added)
trunk/pyina/tests/Make.mm (added)

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